PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28057.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NF-YC
Protein Properties Length: 249aa    MW: 27031.3 Da    PI: 4.7383
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28057.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.56.2e-56571611102
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdiv
  KFK28057.1  57 QLQMFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIV 155
                 89*****998899************************************************************************************** PP

       NF-YC  97 prdelk 102
                 pr+e+k
  KFK28057.1 156 PREEIK 161
                 **9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.37E-3441151IPR009072Histone-fold
PfamPF008081.8E-2079142IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.8E-3780157IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDTNNQQPPT PPPSSSVYPP GSSSTAVIPP PPPGSTTIAT SGGGASYHHL LQQQLQQLQM  60
FWTYQRQEIE QVNDFKNHQL PLARIKKIMK ADEDVRMISA EAPILFAKAC ELFILELTIR  120
SWLHAEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREEI KEEDDVVGSI GGMVAPTASG  180
VPYYYPPMGQ PTVPGGMMIG RPAIDPTGVY AQAPSQAWQS VWQNSNAGGD DVSYGSGASS  240
GHGNLDNQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C8e-445815719119HapE
4g92_C8e-445815719119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001032130.11e-136nuclear transcription factor Y subunit C-4
RefseqNP_201152.11e-136nuclear transcription factor Y subunit C-4
SwissprotQ9FMV51e-138NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A087GDV50.0A0A087GDV5_ARAAL; Uncharacterized protein
STRINGAT5G63470.11e-135(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-123nuclear factor Y, subunit C4